CDS

Accession Number TCMCG035C19212
gbkey CDS
Protein Id XP_021619588.1
Location join(3653950..3654117,3654663..3654797,3655006..3655085,3655191..3655274,3657463..3657550,3657708..3657868,3658034..3660035,3660733..3661043,3661250..3661562,3661654..3661809,3661909..3662050,3663102..3663178,3666043..3666182,3667242..3667350,3667877..3668071)
Gene LOC110620246
GeneID 110620246
Organism Manihot esculenta

Protein

Length 1386aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA394209
db_source XM_021763896.1
Definition splicing factor 3B subunit 3 isoform X1 [Manihot esculenta]

EGGNOG-MAPPER Annotation

COG_category A
Description Pre-mRNA-splicing factor
KEGG_TC -
KEGG_Module M00352        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12830        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000151        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006508        [VIEW IN EMBL-EBI]
GO:0006511        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010498        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019941        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030163        [VIEW IN EMBL-EBI]
GO:0031461        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043161        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044257        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051603        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901565        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCTGTCTCGGAGGAGGAGTGCTCAAATGCTAAGTCCCGATCGTCGTCTCCTTCAGCAAATGGCGCGTACTACCTGGCCAAGTGCGTTCTCAGAGGAAGCGTTGTTCTTCAGGTCGTCTACGGCCATTTCCGCTCTCCTTCCTCCTCCGACATCGTTTTTGGCAAAGAGACATCTATAGAGTTGGTAATAATCGATGCTGATGGAATTGTACATTCTATCTGTGAGCAGCCTGTATTTGGCACCATTAAAGATCTTGCTGTCATACCTTGGAATGATAAGTTCCATGCGCGAAGCCCACAGATGCAGGGAAAAGACCTTTTGGCTGTTCTTTCTGATTCTGGGAAGCTATCCTTTCTCACATTTTGCAGTGAAATGCATAGGTTCTTTCCTTTGACACATGTTCAACTTTCCAATCCTGGAAACTCGAGACAACAACTAGGAAGAATGCTGGCTGTTGATTCCAGTGGATGCTTTATTGCTACCAGTGCGTATGTGGATCGATTGGCTCTATTCTCCCTTTCTTTATCTGGGGCCAGTGATATCATTGATAAGCAAATATTTTATCCTCCTGAAAATGAGGGACATACAAGTTCCACCAGAATTATCCAGAGGCCAAGTATCTCTGGTACCATATGGAGCATGTGCTTCATTTCAAGGGATTCTAGTCAATCAAGTAAGGAGCATAATCCTGTACTAGCCATTATTCTAAATAGGAGGGGTGCACTCCTAAATGAGCTTCTGTTATTGGGATGGAACATTAGAGAACAGACTATAAATGTTATTTCACTGTATGTTGAAGCTGGACCGATAGCACATGATATTATTGAAGTTCCTCATTCCAATGGATTTGCATTTTTATTCAGGGTTGGTGATGCTCTCTTAATGGATCTTAGAGATGCTCACAACCCCTCTTGTGTCTATCGAACAAGCTTAAATTTCTTGCCCGCTTCAGTTGAAGAGCAGACTTTTGTGGAAGAGCCGTGTAGAGTTCATGATGTTGATGATGATGGTTTGTTCAATGTTGCTGCATGTGCTTTATTGGAGCTTCGGGATTATGACCCCATGTGTATAGATAGTGAAGGCGGCAATGTAAAATCAGCCTCAAAATATGTGTGCTCTTGGAGTTGGGAACCAGAAGTTAATAAAAATCCTAGGATGATCTTTTGTATAGACACAGGAGAGTTTTTTATGATTGAAATTTCTTTCGATCCAGAGGGCCTCAAAGTCAATCTTTCTGATTGTCTGTACAAGGGTCTACCATGCAAGTCACTTTTGTGGGTTGATGGTGGTTTCCTGGCTGCTACTGTAGAGATGGGGGATGGGCTTGTTTTGAAAGTGGAAAACGGAAAACTAATACATACAAGTCCTATTCAAAATGTTGCACCAATCTTGGATATGTCTGTTGTGGATTACCAAGATGAGAAACGTGATCAAATGTATGCCTGTTGTGGTGTGGCCCCTGAAGGGTCATTAAGGATCATTAGGAGTGGCATAAGTGTTGAAAAGCTTCTAAAGACTGCATCTATATATCAAGGCATTACTGGTACCTGGACACTTCGAATGAAAGTAACTGACTTGTATCATTCTTTTCTCGTGCTATCTTTTGTTGAAGAGACCAGGGTGCTATCTGTTGGAGTGAGCTTCACTGATGTGACTGATTCAGTTGGCTTCCAGCCTGATGTCTGTACTTTGGCATGTGGACTTGTCGGTGATGGTTTGCTTGTCCAAATTCACCGAACTGCTGTTCAGCTTTGTTTGCCCACCAAGGTTGCCCATGCTGAAGGTATACCTCTGTCTTCTCCAGTTTGCACATCTTGGTTTCCTGATAATATGAGCATCAGTTTAGGGGCCGTTGGACATGATTTCATTGTTGTATCTACTTCTAATCCATGCTTTTTATACATTCTTGGGGTCAGATTACTTTCAACTTATCGTTATGAGATGTATGAAATGCAATGTTTGAGATTGCTGAACGAGCTATCCTGCATTTCGATACCTCAAAAACATTTTGAACGAAGAAGATTAAATTCTAGCAAATTTGTGGATGATGACTGTACAAGTACCCTTCCTGTTGGGGTTGACATTGGTACTACCTTTGTTATTGGCACACATCGGCCTTCTGTGGAAGTTGTGTCTTTTGTGCCTGATGAGGGCCTAAAAGTTCTAGCCTGTGGGACAATCTCATTAACAAATACTCTGGGAACTGCTATTAGTGGTTGCATCCCTCAAGATGTAAGACTTGTACTGGTTGATCGGTCTTATGTCCTTTCTGGTTTGAGGAATGGAATGCTGCTTCGGTTTGAGTGGCCTCCTGCCTCTTCGATGTCTTCATTACGATTACCACGTTATGGATTTCCAATTGACTCCTGCATGGAAAATGCTGATGGTGTTTTATCAAATGTGCCTGCAATATCTTTTGAGTCACAGACATGTGGTGTTGACTTAATAAGCAAGACGATGGATGATCTACCTGTCAATCTTCAATTGATTGCCACCCGTCGAATTGGCATTACGCCTGTTTTCCTTGTACCCCTGAGTGATTCTCTTGATGCAGACATGATTGCACTCAGTGATAGACCATGGTTATTGCAAACTGCAAGCCACAGCCTCTCTTATACATCAATCTCGTTTCAGCCTTCAACTCATGCCACGCCTGTATGTTCAGCTGATTGCCCAAAGGGAATTTTATTTGTTGCAGAGAACAGTCTACATTTGGTCGAAATGGTGCACAGTAAGAGGCTCAATTTTCAGAAGTTTCATCTTGGAGGTACCCCACGGAAGGTCCTTTACCATAGTGAAAGTCGGTTGTTACTCGTGATGAGAACTGAACTTGGCAATGACACAAGTTCATCTGACATTTGTTGTGTTGATCCCCTCAATGGTTCAATAGTATCAAGTTTTAAACTTGAACCTGGAGAAACAGGAAAATCCATGGCATTGGTGAGGGTTGGAAATGAGCAGGTTTTGGTTATTGGAACTAGTCTTTCTTCTGGTCCAGCTATAATGCCAAGTGGTGAAGCTGAGAGTACCAAGGGCCGTCTAATAGTCCTCTGCCTTGAACACTTGCAAAATTCAGACAGTGGTTCGATGACGTTCTGTTCAAAGGCTGGATCATCTTCTCAACGAACTTCACCATTTCGTGAAGTTGTTGGTCATACTGCTGAACAGCTATCGAGCAGTAGTCTTTGCAGTAGCCCAGACGGTAGCTGTGATGGAGTCAAACTTGAAGAAACTGAAGTATGGCAGTTACGATTGGCATATTCAACCAAGTGGCCTGGAATGGCACTTGCAATCTGTCCTTATCTTGATCATTACTTCTTGGCTTCTGCTGGTAGTGCTTTCTATGTATGTGGTTTTCCGAATGATAATCCCCAAAGAGTGAGAAAGTTTGCTATAGCAAGGACACGTTTTACCATAATATCATTGACTGCACATTTCACTAGAATTGCTGTTGGTGATTGCCGCGATGGCATCCTTTTTTATTCTTATCATGAGGATACTAGAAAACTGGAGCAAGTGTATTGTGACCCATCACAGAGATTAGTTGCTGATTGTGTCCTTATGGATGCTGATACAGCAGTGGTTTCAGATCGTAAGGGAAGCATTGCTGTCTTGTCTTGTTCAAATATTTCAGAACGTAATGCAAGTCCAGAATGTAACTTGACTTTGAGTTGTGCATATTATATGGGTGAAATAGCCATGAGCATTAAGAAGGGATCATTTTCATATAAGCTCCCAGCCGATGATGTGTTGATTGGATGTGATGGGATTGGTGTGAATATTGATGCTTCAAACAACACTATAATGGCCAGTACACTTTTGGGGATTATAATAATATTCATTCCTTTGACAAGGGAAGAACATGAACTCCTAGAAGCTGTCCAAGCTAGACTTGTAGTTCATCCTTTGACTGCTCCTATTTTGGGAAATGATCATAGAGAGTTTCGTGGCCGTGAAAACCAGGTTGGAGCACCTAAGATGCTTGATGGTGATGTGCTGTCTCAGTTTTTGGAGCTAACAAGTATACAGCAAGAGGCAATATTGTCGTTACCTCTTGGTCAACTGGATACCGTTAAAACAGGTTCAAAATCTCCTTTCCCCATTCCGGTTAATCAAGTTGTGCAACTCCTTGAGCGGGTCCATTATGCTCTAAGTTAA
Protein:  
MAVSEEECSNAKSRSSSPSANGAYYLAKCVLRGSVVLQVVYGHFRSPSSSDIVFGKETSIELVIIDADGIVHSICEQPVFGTIKDLAVIPWNDKFHARSPQMQGKDLLAVLSDSGKLSFLTFCSEMHRFFPLTHVQLSNPGNSRQQLGRMLAVDSSGCFIATSAYVDRLALFSLSLSGASDIIDKQIFYPPENEGHTSSTRIIQRPSISGTIWSMCFISRDSSQSSKEHNPVLAIILNRRGALLNELLLLGWNIREQTINVISLYVEAGPIAHDIIEVPHSNGFAFLFRVGDALLMDLRDAHNPSCVYRTSLNFLPASVEEQTFVEEPCRVHDVDDDGLFNVAACALLELRDYDPMCIDSEGGNVKSASKYVCSWSWEPEVNKNPRMIFCIDTGEFFMIEISFDPEGLKVNLSDCLYKGLPCKSLLWVDGGFLAATVEMGDGLVLKVENGKLIHTSPIQNVAPILDMSVVDYQDEKRDQMYACCGVAPEGSLRIIRSGISVEKLLKTASIYQGITGTWTLRMKVTDLYHSFLVLSFVEETRVLSVGVSFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHRTAVQLCLPTKVAHAEGIPLSSPVCTSWFPDNMSISLGAVGHDFIVVSTSNPCFLYILGVRLLSTYRYEMYEMQCLRLLNELSCISIPQKHFERRRLNSSKFVDDDCTSTLPVGVDIGTTFVIGTHRPSVEVVSFVPDEGLKVLACGTISLTNTLGTAISGCIPQDVRLVLVDRSYVLSGLRNGMLLRFEWPPASSMSSLRLPRYGFPIDSCMENADGVLSNVPAISFESQTCGVDLISKTMDDLPVNLQLIATRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTASHSLSYTSISFQPSTHATPVCSADCPKGILFVAENSLHLVEMVHSKRLNFQKFHLGGTPRKVLYHSESRLLLVMRTELGNDTSSSDICCVDPLNGSIVSSFKLEPGETGKSMALVRVGNEQVLVIGTSLSSGPAIMPSGEAESTKGRLIVLCLEHLQNSDSGSMTFCSKAGSSSQRTSPFREVVGHTAEQLSSSSLCSSPDGSCDGVKLEETEVWQLRLAYSTKWPGMALAICPYLDHYFLASAGSAFYVCGFPNDNPQRVRKFAIARTRFTIISLTAHFTRIAVGDCRDGILFYSYHEDTRKLEQVYCDPSQRLVADCVLMDADTAVVSDRKGSIAVLSCSNISERNASPECNLTLSCAYYMGEIAMSIKKGSFSYKLPADDVLIGCDGIGVNIDASNNTIMASTLLGIIIIFIPLTREEHELLEAVQARLVVHPLTAPILGNDHREFRGRENQVGAPKMLDGDVLSQFLELTSIQQEAILSLPLGQLDTVKTGSKSPFPIPVNQVVQLLERVHYALS